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Pearl · 05 of 06

MLH1 and PMS2 loss needs a methylation or BRAF check before a Lynch referral

Add methylation or BRAF testing to MLH1 and PMS2 loss before suggesting Lynch syndrome, and refer other loss patterns to genetics.

When mismatch repair immunohistochemistry shows combined loss of MLH1 and PMS2, the commonest cause in colorectal and endometrial cancer is sporadic MLH1 promoter hypermethylation, not Lynch syndrome. Testing for MLH1 promoter methylation, or BRAF V600E in colorectal cancer, separates the two before a patient is referred for germline testing.

Isolated loss of MSH2, MSH6 or PMS2, or MLH1 loss without methylation, points more strongly to a germline cause and should go straight to genetics referral.

  • Report which MMR proteins are lost, not just 'deficient'.
  • For MLH1 and PMS2 loss, recommend MLH1 promoter methylation testing, or BRAF V600E in colorectal cancer.
  • Recommend genetics referral for loss of MSH2, MSH6 or isolated PMS2, and for unmethylated MLH1 loss.
  • Check internal positive controls before calling loss.

Why it matters

The pattern of loss decides whether a family needs genetic counselling.

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