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Research · 03 of 06

Copy-number profiling split TP53-mutated multiple-classifier endometrial carcinomas in two

Treat the favourable molecular category of a TP53-mutated multiple-classifier endometrial carcinoma as an algorithmic output, and flag adverse morphology explicitly in the report.

Design
retrospective single-institution cohort with integrated immunohistochemistry, targeted sequencing and shallow whole-genome sequencing
Population
33 TP53-mutated multiple-classifier endometrial carcinomas profiled between 2022 and 2025
Primary outcome
copy-number status against clinicopathological features, recurrence and disease-related death
Effect
12/33 (36.4%) copy-number-high; all 6 recurrences and all 3 deaths in that group at median 12.8 months follow-up

TP53-mutated multiple-classifier endometrial carcinomas are tumours carrying a TP53 alteration alongside a POLE mutation or mismatch repair deficiency; current ESGO and FIGO algorithms assign them to the POLE-mutated or mismatch repair-deficient category, which carries a favourable prognosis. Thirty-three such cases identified through routine molecular profiling between 2022 and 2025 were reanalysed with histopathology, immunohistochemistry, targeted sequencing and shallow whole-genome sequencing.

Copy-number-alteration-high status was prespecified as five or more large-scale genomic alterations, defined as gains or losses of 3 Mb or more within a chromosomal arm, excluding whole-arm changes. Twelve tumours (36.4%) were copy-number-high and 21 (63.6%) were copy-number-low. The copy-number-high tumours were more often non-endometrioid, high-grade and advanced-stage on FIGO 2023, and carried higher TP53 variant allele frequencies and higher ratios of that frequency to tumour cellularity.

Outcomes separated completely, and that is both the striking finding and its main limitation. All six recurrences and all three disease-related deaths occurred in the copy-number-high group; none occurred among the copy-number-low patients. Median follow-up, however, was 12.8 months — too short for endometrial carcinoma, where recurrence in a low-risk group would not yet be expected either way.

The practical implication today is interpretive rather than procedural. Shallow whole-genome sequencing is not a routine test and the authors call for validation in larger multicentre cohorts. But it argues for reporting TP53 variant allele frequency relative to tumour cellularity where that is available, and for treating the favourable classification of a multiple-classifier tumour as an algorithmic output rather than a biological conclusion — particularly in a tumour that is high-grade, non-endometrioid and advanced.

  • Flag a multiple-classifier tumour that is non-endometrioid, high-grade or advanced-stage in the report rather than letting the algorithm's favourable category stand alone
  • Report TP53 variant allele frequency alongside tumour cellularity where your panel provides both
  • Do not order shallow whole-genome sequencing on this basis — it is not validated for this use
  • Raise these cases at the multidisciplinary meeting, where the discordance between morphology and molecular class can be discussed
  • Expect the definition of copy-number-high used here (five or more alterations of 3 Mb or more) to differ between studies

Why it matters

The molecular classification exists to avoid overtreating good-prognosis tumours, and multiple-classifier cases are where it may be doing the opposite.

Don't overread it

With 33 cases, nine events and under 13 months of follow-up, this identifies a hypothesis rather than a prognostic group.

The statistics, in plain English

Thirty-three cases with nine events total is too small to compare groups formally, and no hazard ratio is reported. That all events fell in one group looks decisive but is compatible with chance at these numbers — six recurrences distributed by luck would land this way reasonably often. A median follow-up of 12.8 months is the more serious limit: the copy-number-low group has simply not been observed long enough for its recurrences to appear. The copy-number threshold was prespecified, which is in the study's favour, but it was applied to the same cohort used to describe the outcome difference.

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